Selected Recent Publications
1. Moro, S., Chipman, J.K., Antczak, P., Turan, N., Dekant, W., Falciani, F., Mally, A. (2012) Identification and pathway mapping of furan target proteins reveal mitochondrial energy production and redox regulation as critical targets of furan toxicity. Toxicol Sci, (ahead of print).
2. Chen, T., Williams, T.D., Mally, A., Hamberger, C., Mirbahai, L., Hickling, K., Chipman, J.K. (2012) Gene expression and epigenetic changes by furan in rat liver. Toxicology, 292 (2-3): 63-70.
3. Mirbahai, L., Yin, G., Bignell, J.P., Li, N., Williams, T.D., Chipman, J.K. (2011) DNA methylation in liver tumourigenesis in fish from the environment. Epigenetics, 6 (11): 1319-1333.
4. Mirbahai, L., Williams, T.D., Zhan, H., Gong, Z., Chipman, J.K. (2011) Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis. BMC Genomics, 12 (3): 1-16.
5. Williams, T.D., Turan, N., Diab, A.M., Wu, H., Mackenzie, C., Bartie, K.L., Hrydziuszko, O., Lyons, B.P., Stentiford, G.D., Herbert, J.M., Abraham, J.K., Katsiadaki, I., Leaver, M.J., Taggart, J.B., George, S.G., Viant, M.R., Chipman, J.K., Falciani, F. (2011) Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach. PLoS Comput Bio, 7 (8): e1002126.
6. Perkins, E.J., Chipman, J.K., Edwards, S., Habib, T., Falciani, F., Taylor, R., Van Aggelen, G., Vulpe, C., Antczak, P., Loguinov, A. (2011) Reverse engineering adverse outcome pathways. Environ Toxicol Chem, 30 (1): 22-38.
7. Antczak, P., Ortega, F., Chipman, J.K., Falciani, F. (2010) Mapping drug physico-chemical features to pathway activity reveals molecular networks linked to toxicity outcome. PLoS One, 5 (8): e12385.
8. Chen, T., Mally, A., Ozden, S., Chipman, J.K. (2010) Low doses of the carcinogen furan alter cell cycle and apoptosis gene expression in rat liver independent of DNA methylation. Environ Health Perspect, 118 (11): 1597-602.
9. Jones, H.S., Panter, G.H., Hutchinson, T.H., Chipman, J.K. (2010) Oxidative and conjugative xenobiotic metabolism in zebrafish larvae in vivo. Zebrafish, 7 (1): 23-30.
10. Hickling, K.C., Hitchcock, J.M., Oreffo, V., Mally, A., Hammond, T.G., Evans, J.G., Chipman, J.K. (2010) Evidence of oxidative stress and associated DNA damage, increased proliferative drive, and altered gene expression in rat liver produced by the cholangiocarcinogenic agent furan. Toxicol Pathol, 38 (2): 230-43.
11. Craft, J.A., Gilbert, J.A., Temperton, B., Dempsey, K.E., Ashelford, K., Tiwari, B., Hutchinson, T.H., Chipman, J.K. (2010) Pyrosequencing of Mytilus galloprovincialis cDNAs: tissue-specific expression patterns. PLoS One, 5 (1): e8875.
12. Van Aggelen, G., Ankley, G.T., Baldwin, W.S., Bearden, D.W., Benson, W.H., Chipman, J.K., Collette, T.W., Craft, J.A., Denslow, N.D., Embry, M.R., Falciani, F., George, S.G., Helbing, C.C., Hoekstra, P.F., Iguchi, T., Kagami, Y., Katsiadaki, I., Kille, P., Liu, L., Lord, P.G., McIntyre, T., O'Neill, A., Osachoff, H., Perkins, E.J., Santos, E.M., Skirrow, R.C., Snape, J.R., Tyler, C.R., Versteeg, D., Viant, M.R., Volz, D.C., Williams, T.D., Yu, L. (2010) Integrating omic technologies into aquatic ecological risk assessment and environmental monitoring: hurdles, achievements, and future outlook. Environ Health Perspect, 118 (1): 1-5.
13. Santos, E.M., Ball, J.S., Williams, T.D., Wu, H., Ortega, F., van Aerle, R., Katsiadaki, I., Falciani, F., Viant, M.R., Chipman, J.K., Tyler, C.R. (2010) Identifying health impacts of exposure to copper using transcriptomics and metabolomics in a fish model. Environ Sci Technol, 44 (2): 820-6.
14. Katsiadaki, I., Williams, T.D., Ball, J.S., Bean, T.P., Sanders, M.B., Wu, H., Santos, E.M., Brown, M.M., Baker, P., Ortega, F., Falciani, F., Craft, J.A., Tyler, C.R., Viant, M.R., Chipman, J.K. (2010) Hepatic transcriptomic and metabolomic responses in the Stickleback (Gasterosteus aculeatus) exposed to ethinyl-estradiol. Aquat Toxicol, 97 (3): 174-87.