Recent publications
Article
Dos Santos, GA, Magdaleno, GDV & de Magalhães, JP 2024, 'Evidence of a pan-tissue decline in stemness during human aging', Aging, vol. 16, no. 7, pp. 5796-5810. https://doi.org/10.18632/aging.205717
Wang, X, Zhang, Y, Chen, K, Liang, Z, Ma, J, Xia, R, de Magalhães, JP, Rigden, DJ, Meng, J & Song, B 2024, 'm7GHub V2.0: an updated database for decoding the N7-methylguanosine (m7G) epitranscriptome', Nucleic Acids Research, vol. 52, no. D1, pp. D203-D212. https://doi.org/10.1093/nar/gkad789
de Magalhães, JP 2023, 'The longevity bottleneck hypothesis: Could dinosaurs have shaped ageing in present‐day mammals?', BioEssays. https://doi.org/10.1002/bies.202300098
Dos Santos, GA, Chatsirisupachai, K, Avelar, RA & de Magalhães, JP 2023, 'Transcriptomic analysis reveals a tissue-specific loss of identity during ageing and cancer', BMC Genomics, vol. 24, no. 1, 644. https://doi.org/10.1186/s12864-023-09756-w
Mikaeloff, F, Gelpi, M, Escos, A, Knudsen, AD, Høgh, J, Benfield, T, de Magalhães, JP, Nielsen, SD & Neogi, U 2023, 'Transcriptomics age acceleration in prolonged treated HIV infection', Aging Cell. https://doi.org/10.1111/acel.13951
Lagger, C, Ursu, E, Equey, A, Avelar, RA, Pisco, AO, Tacutu, R & de Magalhães, JP 2023, 'scDiffCom: a tool for differential analysis of cell–cell interactions provides a mouse atlas of aging changes in intercellular communication', Nature Aging, vol. 3, no. 11, pp. 1446-1461. https://doi.org/10.1038/s43587-023-00514-x
Vega Magdaleno, GD, Bespalov, V, Zheng, Y, Freitas, AA & Lourenco Rocha De Magalhaes, JP 2022, 'Machine learning-based predictions of dietary restriction associations across ageing-related genes', BMC Bioinformatics, vol. 23, no. 1, 10. https://doi.org/10.1186/s12859-021-04523-8
Tejada-martinez, D, Avelar, RA, Lopes, I, Zhang, B, Novoa, G, De Magalhães, JP, Trizzino, M & Malik, H (ed.) 2022, 'Positive selection and enhancer evolution shaped lifespan and body mass in great apes', Molecular Biology and Evolution, vol. 39, no. 2, msab369. https://doi.org/10.1093/molbev/msab369
Mikaeloff, F, Svensson Akusjärvi, S, Ikomey, GM, Krishnan, S, Sperk, M, Gupta, S, Magdaleno, GDV, Escós, A, Lyonga, E, Okomo, MC, Tagne, CT, Babu, H, Lorson, CL, Végvári, Á, Banerjea, AC, Kele, J, Hanna, LE, Singh, K, De Magalhães, JP, Benfeitas, R & Neogi, U 2022, 'Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection', Communications Biology, vol. 5, no. 1, 27. https://doi.org/10.1038/s42003-021-02985-3
Liu, L, Song, B, Chen, K, Zhang, Y, De Magalhães, JP, Rigden, DJ, Lei, X & Wei, Z 2022, 'WHISTLE server: a high-accuracy genomic coordinate-based machine learning platform for RNA modification prediction', Methods, vol. 203, pp. 378-382. https://doi.org/10.1016/j.ymeth.2021.07.003
Chatsirisupachai, K, Lesluyes, T, Paraoan, L, Van Loo, P & De Magalhães, JP 2021, 'An integrative analysis of the age-associated multi-omic landscape across cancers', Nature Communications, vol. 12, no. 1, 2345 . https://doi.org/10.1038/s41467-021-22560-y
Review article
de Magalhães, JP 2023, 'Ageing as a software design flaw', Genome Biology, vol. 24, no. 1, 51. https://doi.org/10.1186/s13059-023-02888-y
Bronikowski, AM, Meisel, RP, Biga, PR, Walters, J, Mank, JE, Larschan, E, Wilkinson, GS, Valenzuela, N, Conard, AM, Magalhães, JP, Duan, J, Elias, AE, Gamble, T, Graze, R, Gribble, KE, Kreiling, JA & Riddle, NC 2022, 'Sex‐specific aging in animals: perspective and future directions', Aging Cell, vol. 21, no. 2, e13542. https://doi.org/10.1111/acel.13542
Short survey
De Magalhães, JP & Ocampo, A 2022, 'Cellular reprogramming and the rise of rejuvenation biotech', Trends in Biotechnology, vol. 40, no. 6, pp. 639-642. https://doi.org/10.1016/j.tibtech.2022.01.011
De Magalhães, JP 2022, 'Every gene can (and possibly will) be associated with cancer', Trends in Genetics, vol. 38, no. 3, pp. 216-217. https://doi.org/10.1016/j.tig.2021.09.005
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