Recent publications
Article
Zouraris, D, Mavrogiorgis, A, Tsoumanis, A, Saarimäki, LA, del Giudice, G, Federico, A, Serra, A, Greco, D, Rouse, I, Subbotina, J, Lobaskin, V, Jagiello, K, Ciura, K, Judzinska, B, Mikolajczyk, A, Sosnowska, A, Puzyn, T, Gulumian, M, Wepener, V, Martinez, DST, Petry, R, El Yamani, N, Rundén-Pran, E, Murugadoss, S, Shaposhnikov, S, Minadakis, V, Tsiros, P, Sarimveis, H, Longhin, EM, SenGupta, T, Olsen, AKH, Skakalova, V, Hutar, P, Dusinska, M, Papadiamantis, AG, Gheorghe, LC, Reilly, K, Brun, E, Ullah, S, Cambier, S, Serchi, T, Tämm, K, Lorusso, C, Dondero, F, Melagrakis, E, Fraz, MM, Melagraki, G, Lynch, I & Afantitis, A 2025, 'CompSafeNano project: NanoInformatics approaches for safe-by-design nanomaterials', Computational and Structural Biotechnology Journal, vol. 29, pp. 13-28. https://doi.org/10.1016/j.csbj.2024.12.024
Jiang, M, Wang, X, Han, R, Ning, P, Lynch, I & Ma, J 2025, 'Establishing photocatalysis-self-Fenton system over a S-scheme Fe/Fe2O3@CuBi2O4 for enhancing TC removal via in-situ generating H2O2 and Fe/Cu dual-metal electron cycle: Radical and non-radical pathways', Separation and Purification Technology, vol. 354, no. Part 2, 128675. https://doi.org/10.1016/j.seppur.2024.128675
Tsiros, P, Chimarios, N, Zouraris, D, Tsoumanis, A, Sarimveis, H, Melagraki, G, Lynch, I & Afantitis, A 2025, 'Optimizing nanoparticle-mediated drug delivery: insights from compartmental modeling via the CompSafeNano cloud platform', RSC Sustainability. https://doi.org/10.1039/d4su00686k
Zhang, P, Cao, M, Chetwynd, AJ, Faserl, K, Abdolahpur Monikh, F, Zhang, W, Ramautar, R, Ellis, LJA, Davoudi, HH, Reilly, K, Cai, R, Wheeler, KE, Martinez, DST, Guo, Z, Chen, C & Lynch, I 2024, 'Analysis of nanomaterial biocoronas in biological and environmental surroundings', Nature protocols, vol. 19, pp. 3000–3047. https://doi.org/10.1038/s41596-024-01009-8
Kolokathis, P, Voyiatzis, E, Sidiropoulos, N, Tsoumanis, A, Melagraki, G, Tamm, K, Lynch, I & Afantitis, A 2024, 'ASCOT: A Web Tool for the Digital Construction of Energy Minimized Ag, CuO, TiO2 Spherical Nanoparticles and Calculation of Their Atomistic Descriptors', Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2024.03.011
Jeliazkova, N, Longhin, E, El Yamani, N, Rundén-Pran, E, Moschini, E, Serchi, T, Vrček, IV, Burgum, MJ, Doak, SH, Cimpan, MR, Rios-Mondragon, I, Cimpan, E, Battistelli, CL, Bossa, C, Tsekovska, R, Drobne, D, Novak, S, Repar, N, Ammar, A, Nymark, P, Di Battista, V, Sosnowska, A, Puzyn, T, Kochev, N, Iliev, L, Jeliazkov, V, Reilly, K, Lynch, I, Bakker, M, Delpivo, C, Sánchez Jiménez, A, Fonseca, AS, Manier, N, Fernandez-Cruz, ML, Rashid, S, Willighagen, E, D Apostolova, M & Dusinska, M 2024, 'A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials', Nature protocols, vol. 19, pp. 2642–2684. https://doi.org/10.1038/s41596-024-00993-1
Bhadane, P, Menon, D, Goyal, P, Reza Alizadeh Kiapi, M, Kanta Satpathy, B, Lanza, A, Mikulska, I, Scatena, R, Michalik, S, Mahato, P, Asgari, M, Chen, X, Chakraborty, S, Mishra, A, Lynch, I, Fairen-Jimenez, D & Misra, SK 2025, 'A two-dimensional metal-organic framework for efficient recovery of heavy and light rare earth elements from electronic wastes', Separation and Purification Technology, vol. 360, 130946. https://doi.org/10.1016/j.seppur.2024.130946
Abdolahpur Monikh, F, Lehtonen, Š, Kekäläinen, J, Karkossa, I, Auriola, S, Schubert, K, Zanut, A, Peltonen, S, Niskanen, J, Bandekar, M, von Bergen, M, Leskinen, JTT, Koistinen, A, Bogialli, S, Guo, Z, Kukkonen, JVK, Chen, C & Lynch, I 2024, 'Biotransformation of nanoplastics in human plasma and their permeation through a model in vitro blood-brain barrier: An in-depth quantitative analysis', Nano Today, vol. 59, 102466. https://doi.org/10.1016/j.nantod.2024.102466
Comment/debate
Chakraborty, S, Menon, D, Mikulska, I, Pfrang, C, Fairen-Jimenez, D, Misra, SK & Lynch, I 2025, 'Make metal–organic frameworks safe and sustainable by design for industrial translation', Nature Reviews Materials. https://doi.org/10.1038/s41578-025-00774-6
Letter
Chakraborty, S, Drexel, R, Bhadane, P, Langford, N, Dhumal, P, Meier, F & Lynch, I 2025, 'An integrated multimethod approach for size-specific assessment of potentially toxic element adsorption onto micro- and nanoplastics: implications for environmental risk', Nanoscale. https://doi.org/10.1039/d5nr00353a
Other contribution
Afantitis, A, Antoniou, M, Melagraki, G & Lynch, I 2024, A Systematic Review for the Toxicological impacts associated with Biomedical Applications of Iron Carbide Nanoparticles in Tumour Theranostics. Center for Open Science. https://doi.org/10.17605/osf.io/84rv5
Review article
Meskher, H, Thakur, AK, Hazra, SK, Ahamed, MS, Saleque, AM, Alsalhy, QF, Shahzad, MW, Ivan, MNAS, Saha, S & Lynch, I 2025, 'Recent advances in applications of MXenes for desalination, water purification and as an antibacterial: a review', Environmental Science: Nano, vol. 12, no. 2, pp. 1012-1036. https://doi.org/10.1039/d4en00427b
Zhou, Y, Wang, Y, Peijnenburg, W, Vijver, MG, Balraadjsing, S, Dong, Z, Zhao, X, Leung, KMY, Mortensen, HM, Wang, Z, Lynch, I, Afantitis, A, Mu, Y, Wu, F & Fan, W 2024, 'Application of Machine Learning in Nanotoxicology: A Critical Review and Perspective', Environmental Science and Technology, vol. 58, no. 34, pp. 14973–14993. https://doi.org/10.1021/acs.est.4c03328
Papadiamantis, AG, Mavrogiorgis, A, Papatzelos, S, Mintis, D, Melagraki, G, Lynch, I & Afantitis, A 2024, 'A systematic review on the state-of-the-art and research gaps regarding inorganic and carbon-based multicomponent and high-aspect ratio nanomaterials', Computational and Structural Biotechnology Journal, vol. 25, pp. 211-229. https://doi.org/10.1016/j.csbj.2024.10.020
Kukkola, A, Chetwynd, AJ, Krause, S & Lynch, I 2024, 'Beyond Microbeads: Examining the Role of Cosmetics in Microplastic Pollution and Spotlighting Unanswered Questions', Journal of Hazardous Materials, vol. 476, 135053. https://doi.org/10.1016/j.jhazmat.2024.135053
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