Publications in the Phenome Centre Birmingham

Publications by theme

Toxicological Metabolomics

Use Cases, Best Practice and Reporting Standards for Metabolomics in Regulatory Toxicology, Nature Communications 10, Article number 3041 (2019)
Impact Factor 11.8

M. R. Viant, T. M. D. Ebbels, R. D. Beger, D. R. Ekman, D. J. T. Epps, H. Kamp, P. E. G. Leonards, G. D. Loizou, . I. MacRae, B. van Ravenzwaay, P. Rocca-Serra, R. M. Salek, T. Walk and R. J. M. Weber

Metabolomics Discovers Early-Response Metabolic Biomarkers that Can Predict Chronic Reproductive Fitness in Individual Daphnia magna, Metabolites 8, 42 (2018)
N. S. Taylor, A. Gavin and M. R. Viant

Computational Metabolomics

The metaRbolomics Toolbox in Bioconductor and beyond, Metabolites 9 (10), 200 (2019)
J. Stanstrup, C. D. Broeckling, R. Helmus, N. Hoffmann, E. Mathé, T. Naake, L. Nicolotti, K. Peters, J. Rainer, R. M. Salek, T. Schulze, E. L. Schymanski, M. A. Stravs, E. A. Thévenot, H. Treutler, R. J. M. Weber, E. Willighagen, M. Witting and S. Neumann

msPurity: automated evaluation of precursor ion purity for mass spectrometry-based fragmentation in metabolomics, Analytical Chemistry 89 (4), 2432-2439 (2017)
T. N. Lawson, R. J. M. Weber, M. R. Jones, A. J. Chetwynd, G. Rodrı́guez-Blanco, R. Di Guida, M. R. Viant and W. B. Dunn

Galaxy-M: a Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data, GigaScience 5 (1) (2016)
R. L. Davidson, R. J. M. Weber, H. Liu, A. Sharma-Oates and M. R. Viant

PhenoMeNal: processing and analysis of metabolomics data in the cloud, GigaScience 8, (2) (2019)
K. Peters, J. Bradbury, S. Bergmann, M. Capuccini, M. Cascante, P. de Atauri, T. M. D. Ebbels, C. Foguet, R. Glen, A. Gonzalez-Beltran, U. L. Günther, E. Handakas, T. Hankemeier, K. Haug, S. Herman, P. Holub, M. Izzo, D. Jacob, D. Johnson, F. Jourdan, N. Kale, I. Karaman, B. Khalili, P. E. Khonsari, K. Kultima, S. Lampa, A. Larsson, C. Ludwig, P. Moreno, S. Neumann, J. A. Novella, C. O'Donovan, J. T. M. Pearce, A. Peluso, M. E. Piras, L. Pireddu, M. A. C. Reed, P. Rocca-Serra, P. Roger, A. Rosato, R. Rueedi, C. Ruttkies, N. Sadawi, R. M Salek, S. Sansone, V. Selivanov, O. Spjuth, D. Schober, E. A. Thévenot, M. Tomasoni, M. van Rijswijk, M. van Vliet, M. R. Viant, R. J. M. Weber, G. Zanetti, C. Steinbeck

Publications by technique

Liquid Chromatography Mass Spectrometry (LCMS)

International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis, Analytical Chemistry, 91(22), 14407-14416 (2019)J. W. Thompson, K. J. Adams, J. Adamski, Y. Asad, D. Borts, J. A. Bowden, G. Byram, V. Dang, W. B. Dunn, F. Fernandez, O. Fiehn, D. A. Gaul, A. F. Hühmer, A. Kalli, T. Koal, S. Koeniger, R. Mandal, F. Meier, F. J. Naser, D. O'Neil, A. Pal, G. J. Patti, H. Pham-Tuan, C. Prehn, F. I. Raynaud, T. Shen, A. D. Southam, L. S. John-Williams, K. Sulek, C. G. Vasilopoulou, M. R. Viant, C. L. Winder, D. Wishart, L. Zhang, J. Zheng and M. A. Moseley

Nuclear Magnetic Resonance (NMR) Spectroscopy

Quantitative Lipoprotein Subclass and Low Molecular Weight Metabolite Analysis in Human Serum and Plasma by 1H NMR Spectroscopy in a Multilaboratory Trial, Analytical Chemistry, 90, 11962-11971 (2018)B. Jiménez, E. Holmes, C. Heude, R. F. Tolson, N. Harvey, S. L. Lodge, A. J. Chetwynd, C. Cannet, F. Fang, J. T. M. Pearce, M. R. Lewis, M. R. Viant, J. C. Lindon, M. Spraul, H. Schäfer and J. K. Nicholson

Direct Infusion Mass Spectrometry (DIMS)

A complete workflow for high-resolution spectral-stitching nanoelectrospray direct infusion mass spectrometry-based metabolomics and lipidomics, Nature Protocols 12, 310-328 (2017) Impact Factor 15
A. D. Southam, R. J. M. Weber, J. Engel, M. R. Jones and M. R. Viant

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control, Scientific Data 1, Article 140012 (2014)
J. A. Kirwan, R. J. M. Weber, D. I. Broadhurst and M. R. Viant